Friday, August 21, 2009

A(H1N1) virulence: Another View by Prof CK Chan

Here's another commentary by Prof. Dr Chan Chee Khoon, on the state of perceived A(H1N1) virulence in Malaysia vis-a-vis other countries.

Prof Chan is a Harvard-trained health epidemiologist based in Penang.

A(H1N1) virulence


Chee-khoon Chan Fri, Aug 21, 2009 at 1:33 PM

This might help to address some of the concerns over A(H1N1) virulence in Malaysia:

"..Most cases described during the three pandemics of the 20th century and during seasonal influenza involve transient illness not requiring hospitalisation. Most deaths are described in the very young or the elderly or those with underlying disease. The 1918-1919 pandemic, however, was characterised by a high mortality rate in healthy young adults and an estimated CFR of 2-3% [5]. Even with a low CFR, seasonal influenza epidemics cause significant morbidity and mortality with an estimated three to five million cases of severe illness and about 250,000 to 500,000 deaths worldwide [6].
To date, the CFR attributable to the current H1N1 pandemic has been estimated at around 0.4%, based on surveillance data from Mexico and mathematical modelling [7]. This CFR is higher than that of average seasonal influenza but remains of the same order of magnitude. Whether this will change before the expected epidemic peak in the northern hemisphere in the autumn is unknown.
Evaluating CFR during a pandemic is a hazardous exercise. Aside from the issue of whether or not a death has been caused by the influenza infection, cases tend to be detected initially among severely ill patients with a higher probability of dying. This leads to an overestimation of the computed CFR at the beginning of an outbreak. The computed CFR subsequently evolves as the case reporting strategy is adapted to the situation. When the situation no longer requires exhaustive reporting of cases, the computed CFR will inevitably increase and grossly overestimate the true CFR..."

I searched the WHO and CDC websites, but couldn't find A(H1N1) statistics by country. Wikipedia has compiled the figures below, from the European Centre for Disease Prevention and Control website (daily updates, as of Aug 19, 2009) and Pan American Health Organization website, and in some cases from national websites:

Some points to note:
1) these figures cannot be used to asess the virulence of the virus circulating in the reporting country (case fatality rate, A(H1N1) deaths divided by laboratory-confirmed cases), since the pandemic has reached the stage where lab confimration of cases would overwhelm testing capacity, and most countries are now reporting only lab confirmed fatalities, i.e. the CFR is inflated to varying degrees in different countries).

2) among Malaysia's 68 reported fatalities (lab confirmed), up to 11 cases remain ambiguous as to A(H1N1) causality, although they were virus positive. perhaps our legislators (and the media) could request clarification from the relevant authorities

3) were there unregistered migrant workers among the Malaysian fatalities? if so, was treatment delayed because they were hesitant to identify themselves to health agencies or healthcare providers?

4) since the case fatality rate is not useful at this point for tracking virulence, surveillance has now shifted to unusual clustering, changes in transmission patterns, in patient profile, in natural history of the disease, etc which might suggest an evolutionary shift. Prof Adeeba's observations of rapid decline in cases with pneumonia complications deserve close attention.

Best,
Chan CK

Pandemic (H1N1) 2009 by country
Summary of official reports.‡‡
Country Indicators Cases Deaths
Spread-Trend/
Intensity/Impact
Laboratory
confirmed‡‡
Confirmed
(Suspected)
ECDC total[1]
243,587 2,349
Reports Total
257,225 2,438
United States^ W - * low[2] (47,390)[3] 480[4]
Brazil R = * mod[2] 5,767[5] 421[6]
Argentina W - ** low[7] (6,768)[7] 407[8]
Mexico W - *** mod[2] 19,634[9] 164[9](77)[10]
Australia
32,799[11] 128[11]
Thailand W = ** mod[12] 13,019[13] 111[13]
Chile W - * low[14] 12,104[14][15] 105(7)[14]
Malaysia
4,225[16] 68[1]
Canada W - ** [2] (11,976)[17] 67[1]
Peru W + * low[12] 6,121[18] 62[1]
United Kingdom# W - * mod [12] [19] [20] (12,903)[21][1] 49[21]
Paraguay W - ** mod[2] 430[22] 39[1]
India R + * low[23] 2,243[24] 32[25]
Costa Rica W

[2] (938)[26] 31[27]
Uruguay W - * low[12] (343)[28] 29[29]
Ecuador W = * mod[2] 1,039[2] 23[2]
Colombia W = * low[12] 367[30] 23[1]
Bolivia W = * mod[2] 1,143[31] 17[32]
Venezuela W - * low[12] 633[33] 17[1]
New Zealand W - * mod[12] 3,074[34] 15[1]
Saudi Arabia
2,000[35] 14[1]
Spain L = * [19] (1,538)[1] 12[1]
El Salvador W - ** mod[12] 706[36] 12[1]
Israel W + * [37] 2,148[38] 11[39]
Singapore
(1,217)[40] 11[1]
Guatemala W = ** mod[2] 624[2] 10[1]
Philippines
(3,207)[41] 8[1]
Honduras W

[2] 278[2] 7[2]
South Africa
3,485[42] 6[1]
Panama W - * low[12] 622[2] 6[1]
Dominican Republic W - * low[12] 182[2] 5[1]
Hong Kong
7,906[43] 4[1]
Indonesia W + * low[12] 930[44] 4[1]
Jamaica W - * low[12] 64[2] 4[1]
Japan
(5,022)[45] 3[46]
Mauritius
30[47] 3[1]
South Korea
2,212[48] 2[1]
Vietnam
1,676[49] 2[1]
Taiwan
1,730[50] 2[1]
France~ N = * [51] (6,422)[52] 2[1][53]
Ireland L = * mod[54] (574)[1] 2[1]
Samoa
100[50] 2[1]
Belgium L = * low[54] 2,353 [1] 1[1]
Netherlands+ W + * [37] (1,473)[1] 1[1]
Brunei W - * mod[12] 971[55] 1[1]
Nicaragua W

[2] 553[56] 1[1]
Lebanon
500[57] 1[1]
Egypt
482[58] 1[1]
Qatar
350[59] 1[1]
Malta W + ** [60] (244)[61] 1[62]
Laos
156[50] 1[1]
Hungary L = * low[54] (145)[1] 1[1]
Iraq
136[63] 1[1]
Palestinian Territories
108[64] 1[1]
Cayman Islands na[65] 97[21] 1[1]
Cook Islands
38[66] 1[1]
Yemen
16[67] 1[67]
Tonga
9[50] 1[1]
Ghana
5[47] 1[1]
St. Kitts and Nevis N = * low[2] 4[2] 1[1]
Other
29,293 0
[show]Countries with no deaths
Country Indicators Confirmed cases Deaths
Germany N
* [37] 12,830[68][1] 0
China
2,861[69] 0
Portugal R + * low[70] 1,757[70] 0
Greece N = * [51][71] 1,424[72] 0
Italy R

[60] 1,238[1] 0
Norway L = * [37] (882)[73] 0
Switzerland N + * low[54] 841[74] 0
Sweden N = * low[54] (672)[1] 0
Kuwait
560[64] 0
Macau
457[75] 0
Denmark N + * [51] (444)[1] 0
Turkey L = * low[54] 372[76] 0
Oman
(300)[77] 0
Cyprus na[19] (297)[1] 0
Romania N = * low[54] 269[1] 0
Cuba R = ** mod[2] 264[2] 0
Iran
250[78] 0
Austria W = * low[54] (222)[1] 0
Czech Republic N = * [37] (209)[1] 0
Finland na[19] (204)[1] 0
Slovenia N = * [19] 203[1] 0
Russia N = * [37] 154[79] 0
Poland N - * low[54] 152[1] 0
Bahrain
148[50] 0
Iceland na[37] 135[1] 0
Serbia N - * low[54] (127)[80] 0
United Arab Emirates
125[50] 0
Luxembourg L + * [37] 118[1] 0
Trinidad and Tobago na[2] 106[50] 0
Jordan
99[64] 0
Slovakia N = * low[54] (99)[1] 0
Fiji W + * mod[12] 97[50] 0
Morocco
84[64] 0
Croatia L = * low[54] 80[81] 0
Bangladesh L = * low[23] 74[82] 0
Kenya
71[83] 0
Sri Lanka L + * low[23] 70[84] 0
Bulgaria N - * [51] 57[1] 0
Estonia N = * low[54] 57[1] 0
Barbados W
* [2] 47[2] 0
Lithuania L = * low[54] 40[1] 0
Macedonia na[37] 40[85] 0
Jersey na 38[21] 0
Akrotiri and Dhekelia
36[21] 0
Afghanistan
32[64] 0
Turks and Caicos Islands na[65] 31[21] 0
Bahamas R

[2] 29[50] 0
Belize L +
[2] 27[50] 0
Marshall Islands
27[50] 0
Cambodia L - * [12] 26[86] 0
Isle of Man na 26[87] 0
Cape Verde na 24[47] 0
Botswana
23[47] 0
Latvia N + * low[54] 23[1] 0
Myanmar L = * low[23] 22[88] 0
Algeria
20[89] 0
Namibia
20[90] 0
Nepal L = * low[23] 20[91] 0
Tunisia
19[64] 0
Montenegro N

[37] 18[50] 0
Suriname na[2] 18[50] 0
Guernsey na 17[21] 0
Kazakhstan N = * low[54] 17[50] 0
Syria
16[50] 0
Tanzania
15[47] 0
Albania L - * low[54] 13[50] 0
Georgia L = * [37] 13[50] 0
Liechtenstein na[19] 13[1] 0
Palau
13[50] 0
Bosnia and Herzegovina L

[92] 10[50] 0
Libya
10[64] 0
Uganda
9[47] 0
Bermuda na[65] 8[50] 0
British Virgin Islands
8[50] 0
Guyana L

[2] 8[50] 0
St. Lucia W + * low[2] 8[2] 0
Falkland Islands
7[21] 0
Nauru na 7[50] 0
Bhutan L = * low[23] 6[93] 0
Tuvalu
6[94] 0
Haiti L + na low[12] 5[50] 0
Papua New Guinea
5[50] 0
Antigua and Barbuda R = * low[2] 4[50] 0
Cameroon
4[95] 0
Ethiopia
4[47] 0
Zambia
4[47] 0
Gibraltar
3[21] 0
Grenada L = * low[2] 3[2] 0
Kiribati
3[50] 0
Seychelles
3[47] 0
Solomon Islands
3[50] 0
Vanuatu
3[50] 0
Azerbaijan N - * mod[54] 2[50] 0
Côte d'Ivoire
2[47] 0
Kosovo
2[50] 0
Maldives N

[23] 2[96] 0
Moldova na[37] 2[50] 0
Pakistan
2[97] 0
Sudan
2[64] 0
Swaziland
2[47] 0
Timor-Leste N

[23] 2[93] 0
Andorra
1[50] 0
Anguilla na[65] 1[21] 0
Belarus na[65] 1[98] 0
Democratic Republic of the Congo
1[99] 0
Dominica N = * low[2] 1[2] 0
Gabon
1[47] 0
Madagascar
1[100] 0
Micronesia
1[50] 0
Monaco
1[50] 0
Mozambique
1[101] 0
St. Vincent and the Grenadines L =
[2] 1[2] 0
Ukraine N = * low[54] 1[50] 0
[show]Graph of confirmed cases
Semi-logarithmic plot of laboratory-confirmed A(H1N1) influenza cases in 2009 according to WHO reports.[102]
Qualitative indicators as defined by WHO[103]. Parameter values:
Geographic spread Trend Intensity Impact on
health care
services
W(idespread)
*** (very high) sev(ere)
R(egional) + (Increasing) ** (high)
L(ocal) = (Unchanged) * (low - moderate) mod(erate)
N(o activity) - (Decreasing) (low) low
‡‡Many countries are not recommending laboratory tests for all suspect cases. As far as known, the affected numbers have been put in brackets. Comparisons in time or between these countries should not be made.
The number of confirmed cases is lower than the total number of cases,[104] and may grossly underestimate the true infection rate.[105]
^Includes Puerto Rico (12 deaths), U.S. Virgin Islands (49 cases), American Samoa (8 cases), and Guam (16 cases, 1 death).
#Does not include Overseas Territories or Crown Dependencies.
~Includes Reunion (105 cases), Mayotte (1 case), New Caledonia (266 cases), French Polynesia (33 cases, 1 death), Wallis and Futuna (8 cases), Martinique (11 cases), Guadeloupe (3 cases), Saint-Martin (4 cases), French Guiana (3 cases).
+Includes Aruba and the Netherlands Antilles.


*********************
CHAN Chee Khoon, ScD
Professor & Convenor
Health & Social Policy Research Cluster
Women's Development Research Centre (KANITA)
Universiti Sains Malaysia
11800 Penang, Malaysia
tel : + 60 4 6533437
fax : + 60 4 6566379
mobile: + 60 (0)17 4808317
email : ckchan50@yahoo.com

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